[UniProt Challenge] Reference

1. Protein - LBS prediction tools

Exploring the computational methods for protein-ligand binding site prediction - ScienceDirect

Exploring the computational methods for protein-ligand binding site prediction

 

2. Protein modelining exercises

Am I Hallucinating or Can AI Now Design Cancer-Curing Antibodies? | by Colby T. Ford, PhD | Jun, 2022 | Medium

Am I Hallucinating or Can AI Now Design Cancer-Curing Antibodies?

https://github.com/colbyford/pemfauxlizumab

GitHub - colbyford/pemfauxlizumab: Pembrolizumab-like Antibody Hallucination using AlphaFold2

facebookresearch/esm: Evolutionary Scale Modeling (esm): Pretrained language models for proteins (github.com)

3. Protein - ligand binding(non-amino acid)

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information - PubMed (nih.gov)

 

4. A.A representation

(PDF) Mathematical characterization - Revised1 (researchgate.net)

5. Modeling

CNN attention based networks (tistory.com)