이번 주 논문들

10월 5주차

Cho et al. 2022. 10. 25.

Discovering faster matrix multiplication algorithms with reinforcement learning | Nature

 

Discovering faster matrix multiplication algorithms with reinforcement learning - Nature

A reinforcement learning approach based on AlphaZero is used to discover efficient and provably correct algorithms for matrix multiplication, finding faster algorithms for a variety of matrix sizes.

www.nature.com

Inferring and perturbing cell fate regulomes in human brain organoids | Nature

 

Inferring and perturbing cell fate regulomes in human brain organoids - Nature

A multi-omic atlas of brain organoid development facilitates the inference of an underlying gene regulatory network using the newly developed Pando framework and shows—in conjunction with perturbation experiments—that GLI3 controls forebrain fate esta

www.nature.com

Hallucinating symmetric protein assemblies | Science

Long-range phasing of dynamic, tissue-specific and allele-specific regulatory elements | Nature Genetics

Expansion of the global RNA virome reveals diverse clades of bacteriophages: Cell

 

Expansion of the global RNA virome reveals diverse clades of bacteriophages

Analysis of viral RNA genomes from thousands of diverse ecosystems substantially expands the known diversity of RNA viruses and show that RNA bacteriophages account for a much greater fraction of the global RNA virome.

www.cell.com

Deep mutational learning predicts ACE2 binding and antibody escape to combinatorial mutations in the SARS-CoV-2 receptor-binding domain: Cell

 

Deep mutational learning predicts ACE2 binding and antibody escape to combinatorial mutations in the SARS-CoV-2 receptor-binding

A machine-learning-guided, protein engineering method enables the prediction of how SARS-CoV-2 RBD combinatorial mutations will impact therapeutic antibody escape and ACE2 affinity. This method facilitates the identification of multisite mutations that are

www.cell.com

Multi-omics single-cell data integration and regulatory inference with graph-linked embedding | Nature Biotechnology

Comparison and imputation-aided integration of five commercial platforms for targeted DNA methylome analysis | Nature Biotechnology

Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning | Nature Biotechnology

Ensemble-function relationships to dissect mechanisms of enzyme catalysis | Science Advances

Protein Structure Prediction Using Rosetta.

 

Sci-Hub | Protein Structure Prediction Using Rosetta. Numerical Computer Methods, Part D, 66–93 | 10.1016/s0076-6879(04)83004-

↓ save Rohl, C. A., Strauss, C. E. M., Misura, K. M. S., & Baker, D. (2004). Protein Structure Prediction Using Rosetta. Numerical Computer Methods, Part D, 66–93. doi:10.1016/s0076-6879(04)83004-0  10.1016/s0076-6879(04)83004-0

sci-hub.se

The co-evolution of the genome and epigenome in colorectal cancer | Nature0

 

The co-evolution of the genome and epigenome in colorectal cancer - Nature

A study maps genetic and epigenetic heterogeneity of primary colorectal adenomas and cancers at single-clone resolution through spatial multi-omic profiling of individual glands and adjacent normal tissue.

www.nature.com

Cryo-EM structure of the SEA complex | Nature

 

Cryo-EM structure of the SEA complex - Nature

The cryo-EM structure of the yeast SEA complex suggests that SEACAT functions as a scaffold for binding TORC1 regulators.

www.nature.com

Evolution of immune genes is associated with the Black Death | Nature

Structural basis for Cas9 off-target activity: Cell

Influences of rare copy-number variation on human complex traits: Cell

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